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tv.qiagenbioinformatics.com

Watch tutorials, interviews and much more on our web based TV channel!

science & medicine

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56:45

QIAGEN Ingenuity Pathway Analysis - ID mapping...

tv.qiagenbioinformatics.com ·

2025/04/16

While Ingenuity Pathway Analysis (IPA) accepts wide range of identifiers (gene, transcript, protein, miRNA, metabolite and more) and allows easy mapping/upload of these identifiers, select identifiers require some work before they can be uploaded. In this training, the trainer will use locus tags for a Chinese Hamster Ovary (CHO) cell line dataset as an example to show how such IDs can be made more compatible for optimal mapping in IPA. The trainer will go over strategies such as• Converting such

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01:02:07

Unlock insights with QIAGEN IPA: Compare, match and...

tv.qiagenbioinformatics.com ·

2025/04/16

Streamline your research with QIAGEN IPA and access over 200,000 expert-curated analyses from publicly available datasets. This webinar introduces three powerful methods to integrate these datasets with your own research, enhancing discovery and interpretation:• Analysis Match: Automatically find analyses and datasets with comparable or contrasting biological results to validate your findings or uncover unexpected and shared mechanisms• Pattern Search: Match your gene patterns or networks against

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01:24:56

Investigating mechanisms underlying disease pathology...

tv.qiagenbioinformatics.com ·

2025/04/16

This webinar will focus on how Human Gene Mutation Database (HGMD) and Ingenuity Pathway Analysis (IPA) can be used together for investigating molecular mechanisms underlying disease pathology.Specifically, the presenter will cover• A brief introduction to HGMD and IPA• Using HGMD to investigate genes and variants of interest• Using IPA for constructing novel networks explaining disease pathology• Easily export tabular and graphical results

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01:03:10

Workflow construction and customization using QIAGEN...

tv.qiagenbioinformatics.com ·

2025/04/16

Recently we have received some requests from CLC users (as well as CLC RNA-seq certification participants) to go over workflow construction and customization using CLC Genomics Workbench. Accordingly, we are hosting this training. The term workflow refers to bioinformatics secondary analysis pipelines such as DNA-seq, RNA-seq, OTU clustering, de novo assembly and more offered by CLC Genomics Workbench.In this training, the trainer will go over• The basics of workflow construction• How to visualize

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01:55:00

QIAGEN IPA new user training

tv.qiagenbioinformatics.com ·

2025/04/07

Are you new to QIAGEN Ingenuity Pathway Analysis (IPA) or interested in expanding your skill set? Join us as we learn more on large dataset analysis and knowledge base queries using QIAGEN IPA.You’ll learn to:• Upload multiple dataset types (e.g., RNA-seq, proteomics, metabolomics) and perform interactive core/pathway analysis in IPA• Learn how to interpret different results, including pathways, key regulators, impact on biological functions/diseases and more• Compare different experimental

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01:14:44

QIAGEN IPA - Discoveries from deep curated public...

tv.qiagenbioinformatics.com ·

2025/04/07

This is a special session put together based on some of the questions we received in recent trainings. IPA allows you to take advantage of deep curate public data from sources such as GEO, GTEx, CPTAC, TCGA and more. This training will focus on below 2 questions mainly but possibly others we receive through the registration and during the live session.1) How to locate pathway analysis of a deep curated public dataset? Example I am interested in 'disease vs normal' or 'treated vs untreated' or 'cell

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56:48

Expanding rare disease horizons Developing a...

tv.qiagenbioinformatics.com ·

2025/04/03

In the absence of genetic testing, is there a clear way forward with diagnosing and treating rare genetic diseases?A great challenge in rare disease research is finding enough affected individuals to create large cohorts. In addition to limited logistical or financial access to NGS, clinicians are often left to rely solely on observed symptoms. Unfortunately, clear guidelines on facilitating diagnoses and care for many diseases in resource-limited settings are non-existent.In this webinar, Claudio

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05:36

Overlaying Expression Data onto UMAP Plots using the...

tv.qiagenbioinformatics.com ·

2025/04/03

In this video, we show how to color cells based on the expression of genes of interest in a UMAP. We also demonstrate how to examine expression values from the plot in a selected group of cells.Recent training webinar and tutorial that includes UMAP plot generation from single-cell data:Single-cell RNA-seq, cell hashing and spatial transcriptomicsTutorial: Perform Single-Cell RNA Expression and Velocity Analysis

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05:05

Finding the Perfect CLC Tool for your Workflow

tv.qiagenbioinformatics.com ·

2025/04/03

Here are some quick tips on locating tools in CLC Genomics Workbench version 25+

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07:53

Visualizing Spatial Transcriptomics Data in CLC...

tv.qiagenbioinformatics.com ·

2025/04/03

How to import and visualize spatial transcriptomics data in CLC

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04:20

Installing CLC Network License manager and...

tv.qiagenbioinformatics.com ·

2025/04/03

How to install the CLC network license manager, network licenses, and CLC Genomics Workbench on Windows

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05:43

Convenient Way To Launch Analysis Tools from UMAP...

tv.qiagenbioinformatics.com ·

2025/04/03

In this video, we demonstrate the different tools that can be launched directly from the UMAP plot with a simple right-click.Recent training webinar and tutorial that includes UMAP plot generation from single-cell data:Single-cell RNA-seq, cell hashing and spatial transcriptomicsTutorial: Perform Single-Cell RNA Expression and Velocity Analysis

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05:26

Importing Single Cell Data into CLC Genomics Workbench

tv.qiagenbioinformatics.com ·

2025/04/03

Single cell expression matrices can be imported into CLC manually using the import single cell matrix tool or they can be imported automatically using workflows. https://resources.qiagenbioinformatics.com/manuals/clcsinglecellanalysis/current/index.php?manual=Import_Expression_Matrix.html

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03:22

Precise Workflow Path Control using Branching Elements

tv.qiagenbioinformatics.com ·

2025/04/03

Direct outputs through a workflow based on sequence count, coverage, and sample quality using branching elements https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Branching_elements.html

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01:27:34

Network construction and customization in QIAGEN...

tv.qiagenbioinformatics.com ·

2025/03/28

Per attendees’ request from a recent training, we are hosting this in-depth training focused on how to effectively construct a network and easily modify it for both no dataset or dataset (RNA-seq, proteomics, etc.) in QIAGEN Ingenuity Pathway Analysis.In this interactive training, attendees will learn:• How to construct a network from scratch or open a network/pathway of interest from their own analysis or Ingenuity database• How to effectively use tools present in build and overlay menu to add

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01:19:48

Wrapping external applications into QIAGEN CLC...

tv.qiagenbioinformatics.com ·

2025/03/27

QIAGEN’s CLC bioinformatics software portfolio provides user-friendly and intuitive solutions that run on any platform. This helps scientists to focus on the biology of their research without requiring them to write code, or compile and run software from the command line.At QIAGEN we understand, however, that no single piece of software can meet the needs of every bioinformatics challenge. Sometimes, you need to supplement standard pipelines with your own scripts, open-source tools or third party

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43:05

Screening 100,000 newborns using whole genome...

tv.qiagenbioinformatics.com ·

2025/03/25

In this on-demand recording from ACMG 2024, hear from Dr. David Bick, Principal Clinician of the Newborn Genomes Program at Genomics England, as he discusses the first-of-its-kind initiative aiming to sequence the genomes of 100,000 newborns in England to screen for over 200 selected conditions.In his talk, you will learn about:The development and deployment of The Generation StudyHow Genomics England selected the genes and conditions to include in the point-of-care testHow QIAGEN provided

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01:31:13

RNA-seq data analysis using QIAGEN CLC Genomics...

tv.qiagenbioinformatics.com ·

2025/03/25

For RNA-seq data, you will learn how to:• Import FASTQ files, cell matrix files and metadata and how to download references• Map reads to a reference genome and generate gene and transcript counts and QC reports displaying % mapped reads, knee plots, etc.• Generate visualizations of results, such as heatmaps, differential expression tables, PCA/PCOA plots, Venn diagrams, sankey plot and others• Easily customize RNA-seq workflows • Export publication-quality graphics, tables and reportsPer audience

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55:23

Easily search and interpret 'omics datasets using...

tv.qiagenbioinformatics.com ·

2025/03/25

In this webinar, the trainer will cover a highly requested usecase using OmicSoft Explorer and IPA Interpret, two of the new features recently introduced to both QIAGEN IPA and OmicSoft customers.Specifically, the trainer will go over how to• Easily search for deep curated high-quality omics (RNA-seq, scRNA-seq etc.) datasets of interest based on user defined criteria (Disease name, drug treatment and more) curated from sources such as GEO, SRA, TCGA and more• Explore project details to gain better

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59:55

Analysis of microbial communities for...

tv.qiagenbioinformatics.com ·

2025/03/25

Geomicrobiology and petroleum microbiology are important fields that study how microbes interact with geological, geochemical, and petroleum processes. Understanding the composition of microbial communities can advance our knowledge of biotransformation, biodegradation, and bioremediation in industries such as environmental engineering, mining, and oil and gas.QIAGEN CLC Genomics Workbench and the Microbial Genomics Module provide tools and workflows for a broad range of bioinformatics applications,

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