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tv.qiagenbioinformatics.com

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science & medicine

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01:36:49

Network construction and customization with QIAGEN...

tv.qiagenbioinformatics.com ·

2024/05/02

This in-depth training focuses on effectively constructing a network, with or without a dataset (RNA-seq, proteomics, etc.), and easily modifying it – all within Ingenuity Pathway Analysis. In this interactive training, attendees will learn how to: • Construct a network from scratch or open a network/pathway of interest from their analysis or the Ingenuity Knowledge Base • Effectively use tools present in the Build and Overlay menus to add molecules (genes/proteins, chemicals, metabolites),

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01:00:20

Integrating deeply curated omics data with APIs for...

tv.qiagenbioinformatics.com ·

2024/04/15

This webinar is for data scientists and bioinformaticians who need extensive high-quality omics data to target discovery efforts. Learn how to programmatically discover, retrieve, filter, aggregate and analyze omics (RNA-seq, scRNA-seq, microarray, proteomics etc.) data from QIAGEN’s comprehensive repository of deeply curated multi-omics data. Attendees will learn how to leverage extensive metadata to find and combine datasets of interest, find and test signatures, and perform custom analyses to

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58:32

Gene set enrichment, target validation and more using...

tv.qiagenbioinformatics.com ·

2024/04/15

This 60-minute session will teach you how to effectively use a relationship database for various applications. QIAGEN Biomedical Knowledge Base (Biomedical KB), a database containing high-quality relationship literature findings, the same database backing Ingenuity Pathway Analysis/IPA) will be used, but learnings can also be applied to similar databases.The following points will be discussed: • Gene set enrichment analysis using Biomedical KB • Target validation through Biomedical KB findings •

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01:28:40

Single cell RNA-seq – data upload & analysis in...

tv.qiagenbioinformatics.com ·

2024/04/02

This training is generated based on feedback from recent “Single Cell RNA-Seq, Cell Hashing, and Spatial Transcriptomics” training. Some registrants requested below topics to be covered in more details.• How to upload single cell RNA-seq data in IPA and start an analysis? • How to do above if you don’t have CLC Genomics Workbench? • How to do above if you do have CLC Genomics Workbench? • Tips and tricks regarding single cell RNA-seq data in IPA • Possibly other topics based on user feedback

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01:35:24

Multi-omics (metabolomics, proteomics,...

tv.qiagenbioinformatics.com ·

2024/03/28

This 90-minute training session is about how QIAGEN Ingenuity Pathway Analysis (IPA) allows visualization of molecular intricacy and variations at multiple levels such as transcriptome, proteome, and metabolome. Through a series of brief technical vignettes, it is demonstrated how to: · Generate associations among molecular signatures obtained via integrating multi-omics data · Extract mechanisms from multi-omics data for precision medicine · Disease stratification based on multi-omics profiles ·

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01:00:17

Advances in Genomic Testing for Rare Disease Diagnostics

tv.qiagenbioinformatics.com ·

2024/03/26

Over the past decade, whole-exome and whole-genome sequencing have transformed the diagnosis of patients with suspected rare genetic diseases. However, despite recent advancements, a large number of patients with rare genetic diseases remains undiagnosed for years because they have limited access to comprehensive genomic testing.In this virtual roundtable of leading rare disease experts, panelists will discuss: The state of clinical genomic testing at their institutions. How recent advances in

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38:37

Agilent Alissa to QCI Interpret: How can your lab...

tv.qiagenbioinformatics.com ·

2024/03/26

In 2023, Agilent announced the discontinuation of their Alissa Interpret clinical informatics platform by the end of 2024. As a result, many of their current customers need to transition to a new variant interpretation and reporting software within a tight timeframe. However, when evaluating new interpretation solutions, clinical labs must consider a variety of factors, including: Content quality for clinical reporting Flexibility to adapt current workflows to a new platform Retaining historical

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01:29:13

Single Cell RNA-Seq, Cell Hashing, and Spatial...

tv.qiagenbioinformatics.com ·

2024/03/26

In this training, you will learn how to analyze and interpret your own single cell RNA-seq data using QIAGEN CLC Genomics Workbench starting with either FASTQ or matrix files. Using CLC Genomics Workbench, you will learn how to perform secondary analysis on your single cell RNA-seq data. Specifically, you will learn how to: • Import your raw FASTQ or processed cell-matrix files. • Use pre-configured but customizable pipelines/workflows for single cell RNA-seq data. • Generate high resolution visuals

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01:29:48

ATCC cell line data utilization for cell line...

tv.qiagenbioinformatics.com ·

2024/03/14

Cancer cell line models have been a cornerstone of cancer research for decades. Profiling cancer cell lines can be a powerful tool to identify gene alterations or cancer-related pathways and aid in discovering putative drug targets. In this webinar, we'll use QIAGEN OmicSoft Lands and QIAGEN Ingenuity Pathway Analysis (IPA) to help you select cell lines and translate insights from your cell line experiments for drug target discovery.During this 90-minute discussion, we'll explore how you can use

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45:16

Leveraging expert-curated knowledge from COSMIC and...

tv.qiagenbioinformatics.com ·

2024/03/13

The cancer drug discovery landscape is shifting. While research continues to grow in cost and complexity, the pace of development has never been faster. Biopharmaceutical companies can’t afford to waste time and resources pursuing ineffective or unsafe ideas.In this talk, our experts discuss how biopharmaceutical companies can leverage key genomic, biomedical, and clinical trial databases to improve and accelerate cancer drug discovery while avoiding potential pitfalls. Through a series of use

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01:07:25

Using COSMIC to predict, identify, and avoid...

tv.qiagenbioinformatics.com ·

2024/03/11

Whether your lab is researching and developing targeted cancer therapies or you are analyzing and interpreting diagnostic tests at the point-of-care, a critical part of your workflow is understanding the structural and functional impact of cancer-related mutations.The Catalogue Of Somatic Mutations In Cancer (COSMIC) is an expert-curated database encompassing a wide variety of somatic mutation mechanisms causing human cancer. Containing more than 24 million somatic variants with detailed

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03:50

Molecule Activity Predictor (MAP)

tv.qiagenbioinformatics.com ·

2024/03/06

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04:34

Regulator Effects Analysis

tv.qiagenbioinformatics.com ·

2024/03/06

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01:27:15

Biomarker discovery, target validation, and variant...

tv.qiagenbioinformatics.com ·

2024/02/29

In this webinar, users will learn how to leverage solutions from QIAGEN Digital Insights to discover biomarkers, validate targets, and identify variants. Specifically, users will learn:1. How to locate public studies of interest using OmicSoft DiseaseLand. 2. Investigate expression of genes of interest across different treatments, disease states, etc. 3. Identify variants of interest for candidate biomarkers and targets using Human Gene Mutation Database. 4. Leveraging the QIAGEN Knowledgebase in

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01:25:24

Public single-cell RNA-seq data investigation using...

tv.qiagenbioinformatics.com ·

2024/02/27

Single-cell RNA-sequencing (scRNA-seq) is widely used to investigate tissue heterogeneity, identify novel cell types, study pathogenic mechanisms, develop targeted therapy (including immunotherapy) and more. Accordingly, a tremendous amount of scRNA-seq data has been deposited to public domains like GEO.In this training, you will learn how to · Locate public single-cell studies of interest using QIAGEN Omicsoft Single Cell Lands · Study different cell types by dimension reduction plots (for

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01:20:43

Workflow construction and customization using QIAGEN...

tv.qiagenbioinformatics.com ·

2024/02/22

Recently we have received some requests from CLC users (as well as CLC RNA-seq certification participants) to go over workflow construction and customization using CLC Genomics Workbench. Accordingly, we are hosting this training. The term workflow refers to bioinformatics secondary analysis pipelines such as DNA-seq, RNA-seq, OTU clustering, de novo assembly and more offered by CLC Genomics Workbench. In this training, the trainer will go over • The basics of workflow construction • How to

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01:02:01

Introduction to Analysis Match in IPA - Compare your...

tv.qiagenbioinformatics.com ·

2024/02/14

With all the expression datasets that are available to the public, wouldn’t it be great to compare them to your own expression data, so you could get a better understanding of the underlying biology of your data?With QIAGEN IPA Analysis Match, you can compare your expression data with well over 100,000 publicly available datasets that have been processed and analyzed in IPA, as well as all the IPA analyses that you have performed to date. In this webinar, we will cover how Analysis Match works and

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01:30:51

Long reads analysis using QIAGEN CLC Genomics...

tv.qiagenbioinformatics.com ·

2024/02/13

This webinar will introduce users to the long read support plugin for Oxford Nanopore and PacBio sequencing reads in QIAGEN CLC Genomics Workbench. Participants will learn the following: • Download and install needed plugins. • Import data required for the analysis. • Long read de novo assembly. • Map reads to a reference and visualize an assembly. • Use BLAST to investigate the contigs. • Additional long read tools: polish with short reads, structural variant calling. • Genome finishing tools:

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01:37:53

IPA deeper dive: Making most out of user’s...

tv.qiagenbioinformatics.com ·

2024/01/31

Many of you who use QIAGEN Ingenuity Pathway Analysis (IPA) have requested a deeper dive into the IPA core analysis (also known as expression analysis), which is - performed on RNA-seq, scRNA-seq, proteomics and many other types of ‘omics data). You’ve specifically requested to cover topics like causal networks, regulator effects, etc., in more detail. That’s why we’ve designed this training to focus on these topics and more: · What are the different result types of results produced by an IPA core

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31:03

What’s new in QIAGEN CLC Genomics Workbench version 24

tv.qiagenbioinformatics.com ·

2024/01/31

QIAGEN CLC Genomics Workbench version 24 is here with exciting updates we'd like to share with you. These include: Our QIAGEN CLC LightSpeed Module which now provides ultrafast somatic workflows Spatial Transcriptomics and ParseBio support in QIAGEN CLC Single Cell Analysis Module Amplicon classification for ONT reads in QIAGEN CLC Microbial Genomics Module New Structural variant detection for long read and De novo assembly of PacBio HiFi reads Importer for Element, PacBio Onso, Ultima reads,

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