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tv.qiagenbioinformatics.com

Watch tutorials, interviews and much more on our web based TV channel!

science & medicine

All Episodes

12:20

Overview of Result Files Created by QIAseq DNA Workflows

tv.qiagenbioinformatics.com ·

2024/01/03

This video provides an overview of the result files obtained when running the "Identify QIASeq DNA Somatic Variants" workflow. How to run the workflow is outlined in the tutorial Find Actionable Variants With QIASeq Panels.

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07:33

Making Use of Workflow Snippets

tv.qiagenbioinformatics.com ·

2024/01/03

Different workflows can share a sequence of connected tools between them. To speed up the creation of new workflows, workflow fragments can be stored in snippets and reused.

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06:37

Modification of Workflows in CLC Genomics Workbench -...

tv.qiagenbioinformatics.com ·

2024/01/03

Additional modification options for existing workflows include the removal/addition of tools as well as output files in a workflow. This is the focus of this video.

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06:26

Modification of Workflows in CLC Genomics Workbench -...

tv.qiagenbioinformatics.com ·

2024/01/03

While existing workflows (e.q. Template Workflows) provide a good starting point for data analysis, it is commonly required to tailor data analysis towards specific needs. How parameters can be modified is discussed in this video.

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06:32

How to Create an Analysis Workflow in CLC Genomics...

tv.qiagenbioinformatics.com ·

2024/01/03

Creating analysis pipelines for automation and standardization using the Workflow Editor.

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04:22

Introduction to Workflows in CLC Genomics Workbench

tv.qiagenbioinformatics.com ·

2024/01/03

Introduction to Workflows for the graphical user interface guided construction of bioinformatics analysis pipelines.

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08:57

Importing Illumina Reads into CLC Genomics Workbench

tv.qiagenbioinformatics.com ·

2024/01/03

Importing single and paired end reads. If the organization of Illumina files for import does is not the default, customization of the import is possible using the Custom read structure field.

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01:34:46

RNA-seq data analysis and interpretation with Sankey...

tv.qiagenbioinformatics.com ·

2023/12/18

During this 120-minute training, we’ll teach you how to easily analyze and interpret RNA-seq data using QIAGEN CLC Genomics Workbench and QIAGEN Ingenuity Pathway Analysis (IPA) software. For RNA-seq data, you will learn how to: • Import FASTQ files, cell-matrix files and metadata and how to download references • Map reads to a reference genome and generate gene and transcript counts and QC reports displaying % mapped reads, knee plots, etc. • Generate visualizations of results, such as heatmaps,

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01:31:11

Target exploration and cell line selection for drug...

tv.qiagenbioinformatics.com ·

2023/12/18

Cancer cell line models have been a cornerstone of cancer research for decades. Profiling cancer cell lines can be a powerful tool to identify gene alterations or cancer-related pathways and aid in discovering putative drug targets. In this webinar, we'll use QIAGEN OmicSoft Lands and QIAGEN Ingenuity Pathway Analysis (IPA) to help you select cell lines and translate insights from your cell line experiments for drug target discovery. During this 90-minute discussion, we'll explore how you can use

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55:22

How to perform DNA-seq and resequencing data analyses...

tv.qiagenbioinformatics.com ·

2023/12/18

In this webinar, we’ll introduce algorithms required to perform data analysis for resequencing next-generation sequencing data. Together, we’ll explore: • Read mapper • Variant callers • Annotations and filters • Genome Browser

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42:22

Translating COSMIC's gold standard data into...

tv.qiagenbioinformatics.com ·

2023/12/13

As the vast landscape of genetic oncology continues to expand, the ability to understand and utilize the full potential of this rich data becomes increasingly challenging. As a result, researchers, scientists, and clinicians need an accessible, streamlined and standardized way of keeping track of this potentially crucial, ever-growing body of actionable knowledge. Over the course of 20 years, COSMIC, the Catalogue Of Somatic Mutations In Cancer, has expertly curated the world’s largest, most

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59:42

Mining curated knowledge graphs and validating with...

tv.qiagenbioinformatics.com ·

2023/12/11

In an era of near-limitless public experimental data but little standardization, meaningful insights are lost to noise. Large collections of quality experimental data are essential for big-picture discoveries that stand up to scrutiny.In this webinar, you will learn how to feed your drug discovery programs by integrating connections mined from QIAGEN Biomedical Knowledge Base with deeply-curated disease datasets from QIAGEN OmicSoft Lands.Combining unified 'omics datasets with contextual

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45:33

How clinical labs can confidently assess...

tv.qiagenbioinformatics.com ·

2023/12/07

Across various stages of the clinical oncology workflow, from panel design to genomic testing and molecular tumor boards, the identification and validation of actionable genomic alterations is critical. The advent of next-generation sequencing (NGS) has led to an exponential increase in the number of variants detected in tumor testing, posing a challenge for clinical cancer genetics professionals seeking to confidently discern clinically relevant mutations that can guide patient care decisions. Join

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01:00:15

QIAGEN CLC Genomics Workbench for your miRNA data...

tv.qiagenbioinformatics.com ·

2023/12/05

Join us for our webinar, where we‘ll focus on miRNA data analysis using QIAGEN CLC Genomics Workbench and Biomedical Genomics Analysis plugin. Together, we‘ll explore how you can: • Import reads and metadata • Download miRBase database • Quantify miRNA expression • Perform differential expression analysis • Visualize your results • Create and use a custom database

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52:27

Part 2: AI-Powered Hereditary Disease Diagnostics:...

tv.qiagenbioinformatics.com ·

2023/11/30

Clinical exome sequencing (CES) is increasingly being adopted by small and mid-sized laboratories to diagnose genetic diseases, aid treatment decisions, and provide prognostic information. However, the exponential increase in genetic data generated from exome and genome panels poses significant workflow challenges. The ability to prioritize potentially pathogenic variants from large datasets and identify the few candidate variants becomes more difficult. This issue is further amplified in cases

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01:31:57

Discovery from public data (GEO, SRA and more) using...

tv.qiagenbioinformatics.com ·

2023/11/20

Per user feedback, we are hosting a comprehensive training on how to effectively use sample level public data and metadata from sources like GEO, SRA, TCGA, GTEx, Blueprint, CCLE and other sources through Ingenuity Pathway Analysis (IPA) and IPA Analysis Match Explorer feature. The trainer will walk through usecases in realms of biomarker discovery, drug target investigation, studying survival in custom patient cohorts, multi-gene correlation and more. Note: The word “condition” below refers to

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01:30:51

Easily process your FASTQ files

tv.qiagenbioinformatics.com ·

2023/11/17

Do you ever get stuck processing raw FASTQ data or cell matrix data from your RNA-seq, scRNA-seq or other NGS assays using? Are you interested in creating a differential expression table that’s compatible with the QIAGEN Ingenuity Pathway Analysis (IPA) software you use? In this training, you’ll learn how to use QIAGEN CLC Genomics Workbench to easily process your FASTQ files and generate differential expression tables without using command line tools. We’ll also explore how you can generate other

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01:00:00

How to scale-up comprehensive genomic profiling and...

tv.qiagenbioinformatics.com ·

2023/11/10

As gene panels increase in size, comprehensive genomic profiling and variant interpretation becomes more complex and time-consuming, which places tremendous burden on labs needing to scale and grow case volume. QIAGEN Clinical Insight (QCI) Interpret for Oncology is a clinical decision support platform powered by augmented molecular intelligence that enables rapid, evidence-powered comprehensive genomic profiling at scale. QCI Interpret for Oncology is supported by the world’s most comprehensive,

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37:37

The epididymis: Balancing the burden and...

tv.qiagenbioinformatics.com ·

2023/11/03

The responsibility of fertility is disproportionately placed on women, who bear most of the health, emotional and financial burdens. Infertility is rapidly rising, with one in six Australian couples seeking assisted reproductive technologies to help them start a family, and over 50% of cases involving a male factor. Despite these contributions, we still don’t fully understand the mechanisms that create competent sperm for fertilization, which occurs during their transit from the epididymis, a highly

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01:04:01

What’s new in QIAGEN IPA Fall Release 2023?

tv.qiagenbioinformatics.com ·

2023/10/27

Interested in learning about new features and functionalities that have been added to IPA lately? During this webinar, we will highlight the updates from the QIAGEN IPA Fall Release and from previous releases from this year. Topics, amongst others, will be • Newly added findings and pathways • Reactome pathways • Artificial intelligence approves to pathways • More precise matches in Analysis Match • Cell type prediction • New queueing view for checking your analysis status

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