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tv.qiagenbioinformatics.com

Watch tutorials, interviews and much more on our web based TV channel!

science & medicine

All Episodes

01:24:55

Drug treatment, toxicology and target safety...

tv.qiagenbioinformatics.com ·

2025/08/25

In this 90-minute training, users will learn how to do drug treatment, toxicology and target safety assessment related discoveries using QIAGEN Ingenuity Pathway Analysis (IPA) and QIAGEN Omicsoft Lands. Using public data from GTEx (normal tissue), GEO, cancer collections and more, attendees will learn how to use Omicsoft Lands to: • Investigate a drug target or biomarker expression across different normal tissues, disease conditions, treatments and more • Correlate expression of 2 or more genes •

en-us

01:13:44

Drug Target and Biomarker Investigation using...

tv.qiagenbioinformatics.com ·

2025/08/25

In this 90-minute training, attendees will learn how to use basic expression analysis functionalities in QIAGEN OmicSoft OncoLand. QIAGEN OmicSoft Single Cell Land will also be discussed, focusing on public single-cell data. Key focus will be on Biomarker discovery with QIAGEN OmicSoft OncoLand leveraging public oncology data from GEO, TCGA and other collections to: • Discover and validate biomarker expression in diseases, disease subtypes, treatments, cell types, etc. • Identify a list of

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01:24:39

Checkpoint inhibitors investigation in context of...

tv.qiagenbioinformatics.com ·

2025/08/25

This training will focus on how QIAGEN Omicsoft Studio and IPA can be used to discover new biomarkers, validate (or study) drug targets and identify novel mechanisms of action with user and/or public checkpoint inhibitor datasets from resources like GEO, SRA, TCGA and more.In this training, you will learn how to:· Investigate the expression of a gene/biomarker/drug target across different treatments and diseases· Derive a biomarker/gene signature from a specific condition (for example,

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01:46:03

Public single cell RNA-seq data investigation using...

tv.qiagenbioinformatics.com ·

2025/08/25

Slides from this training:https://qiagen.showpad.com/share/qm9IZA718x6x5h6pfsiTa Single cell lands tutorials: https://omicsoftdocs.github.io/ArraySuiteDoc/tutorials/SingleCellLand/Gene_Views/ Single cell RNA-sequencing (scRNA-seq) has been widely used to investigate tissue heterogeneity, identify novel cell types, study pathogenic mechanisms, development of targeted therapy (including immunotherapy) and more. Accordingly tremendous amount of scRNA-seq data has been deposited to public domains like

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01:32:48

Investigating public scRNA data using OmicSoft and...

tv.qiagenbioinformatics.com ·

2025/08/25

Single cell RNA-sequencing (scRNA-seq) has been widely used to investigate tissue heterogeneity, identify novel cell types, study pathogenic mechanisms, development of targeted therapy (including immunotherapy) and more. Accordingly tremendous amount of scRNA-seq data has been deposited to public domains like GEO. In this training, attendees will learn how to · Locate public single cell studies of their interest using Omicsoft Single Cell Lands · Study different cell types by dimension reduction

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40:34

Authenticated and reproducible cell line 'omics data

tv.qiagenbioinformatics.com ·

2025/08/25

Have you ever tried to access the genomic profiles of cell lines before using them in your preclinical experiments just to come up empty-handed? Maybe you’ve scoured public databases for gene expression information on your cell line to find the reported genomic profile doesn't match the cell line data you recently purchased? We understand that knowing the genomic identity of your cell lines is fundamental to the success of your preclinical experiments. Unfortunately, most publicly available sources

en-us

01:28:33

Drug treatment, toxicology and target safety...

tv.qiagenbioinformatics.com ·

2025/08/25

In this 90-minute training, you’ll learn how to do drug treatment, toxicology and target safety assessment-related discoveries using QIAGEN Ingenuity Pathway Analysis (IPA) and QIAGEN Omicsoft Lands. Using public data from GTEx (normal tissue), GEO, cancer collections and more, you’ll learn how to use Omicsoft Lands to: • Investigate a drug target or biomarker expression across different normal tissues, disease conditions, treatments and more • Correlate expression of two or more genes • Identify a

en-us

59:54

How to triage drug targets with curated, causal...

tv.qiagenbioinformatics.com ·

2025/08/20

In the rapidly evolving landscape of drug discovery, the ability to integrate high-quality research findings into knowledge graphs is paramount. For over twenty years, our scientists have curated the relationships between genes, drugs, diseases, and pathways to power Ingenuity Pathway Analysis. Now, these data are available via our QIAGEN Biomedical KB-HD, which provides direct access to flat files, SQL APIs in Python and R, and the ability to export knowledge graph objects for analysis in Neo4j. In

en-us

57:59

The Forefront of Genomics Eric Green on Making...

tv.qiagenbioinformatics.com ·

2025/08/20

Since the completion of the Human Genome Project over two decades ago, genomics has become progressively entrenched within the bedrock of the biomedical research enterprise. Capitalizing on the momentum of the project’s successful completion, the field of genomics has increasingly expanded and matured, such that genomics is now central and catalytic in basic and translational research, and studies now regularly demonstrate the vital role that genomic information can play in clinical care.Looking

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58:25

Shared Pathways, Many Origins: How Diverse Genetic...

tv.qiagenbioinformatics.com ·

2025/08/20

Over two decades of research have uncovered over 100 genes with rare mutations linked to autism spectrum disorder (ASD), yet transcriptomic and epigenetic analyses reveal convergent dysregulation patterns in ASD brain tissue. In this webinar, learn how Dr. Dan Geschwind and his team at UCLA combine bioinformatics and experimental approaches to show that both common and rare genetic variations converge during early fetal cortical development. Using the largest hiPSC patient cohort and cortical

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38:35

IPA Webinar: Part 3: Search and Explore in IPA

tv.qiagenbioinformatics.com ·

2025/08/19

IPA has broadly been adopted by the life scienceresearch community and is cited in thousands of articles for the analysis, integration, and interpretation of data derived from ‘omics experiments, such as RNA-seq, small RNA-seq, microarrays including miRNA and SNP, metabolomics, proteomics, and small scale experiments. Hosted by two QIAGEN Senior Scientists, this series will show you step-by-step how to implement and use IPA to get the most out of your data. Part 3: Search and Explore in IPA Learn

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43:11

IPA Webinar: Part 1: Introduction to Ingenuity...

tv.qiagenbioinformatics.com ·

2025/08/19

Learn how to quickly and easily identify significant pathways, discover potential novel regulatory networks, and get the most out of your 'omics data!IPA has broadly been adopted by the life science research community and is cited in thousands of articles for the analysis, integration, and interpretation of data derived from ‘omics experiments, such as RNA-seq, small RNA-seq, microarrays including miRNA and SNP, metabolomics, proteomics, and small scale experiments. Hosted by two QIAGEN Senior

en-us

01:22:00

Biomarkers and drug target investigation using...

tv.qiagenbioinformatics.com ·

2025/08/18

There is an almost incomprehensible amount of diverse, non-standardized ‘omics data deposited in different public sources such as GEO, SRA, TCGA, GTEx and others. Scientists who are interested in biomarker discovery and investigation using such data run into the challenge of finding time and resources to locate studies of their interest and then making it usable by cleaning and standardizing these data. Accordingly, this training is focused on how scientists facing the above challenges can use

en-us

01:33:55

Summer 2025 IPA Interpret and OmicSoft Explorer...

tv.qiagenbioinformatics.com ·

2025/08/18

Join us to review exciting new features in IPA Interpret and OmicSoft Explorer.We will walk though the latest enhancements in IPA Interpret like:• Bubble charts for various analysis results• Customizing charts• More context for Graphical Summary results• Explore matching and anti-matching datasets easily with more detailsWe will also walk through how to explore gene signatures in OmicSoft Explorer. You can readily find other experiments that match or anti-match your prescribed list of genes and

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01:54:56

QIAGEN IPA new user training

tv.qiagenbioinformatics.com ·

2025/08/12

Are you new to QIAGEN Ingenuity Pathway Analysis (IPA) or interested in expanding your skill set? Join us as we learn more on large dataset analysis and knowledge base queries using QIAGEN IPA.You’ll learn to:• Upload multiple dataset types (e.g., RNA-seq, proteomics, metabolomics) and perform interactive core/pathway analysis in IPA• Learn how to interpret different results, including pathways, key regulators, impact on biological functions/diseases and more• Compare different experimental

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01:32:25

IPA deeper dive - Making the most out of core...

tv.qiagenbioinformatics.com ·

2025/08/12

A core/expression analysis is performed for RNA-seq, scRNA-seq, proteomics and many other types of ‘omics data. Driven by high demand from new user training sessions, we will dive into the details around a core analysis and its results.Answer questions such as:• What are the different result types produced by an IPA core analysis?• How can we identify key regulators and relevant regulatory networks?• What are the biomarkers and genes associated with diseases and biological processes of interest?•

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54:10

Accelerating biomarker signature discovery for rare...

tv.qiagenbioinformatics.com ·

2025/08/12

Identifying molecular signatures for rare diseases is challenging, mainly due to limited sample sizes and heterogenous data. Researchers must often piece together fragmented evidence to uncover shared biological mechanisms. Though inescapable, this process can be more efficient.See how QIAGEN OmicSoft Lands and Ingenuity Pathway Analysis (IPA) streamlines biomarker signature discovery using curated real-world datasets and powerful causal analytics. With automation powered by SQL, Python and R APIs,

en-us

01:32:32

RNA-seq data analysis using QIAGEN CLC Genomics...

tv.qiagenbioinformatics.com ·

2025/08/12

For your RNA-seq data, you will learn how to:• Import FASTQ files, cell matrix files and metadata• Download and/or import reference and annotations files• Map reads to a reference genome• Generate gene and transcript counts• QC reports displaying % mapped reads etc.• Generate visualizations of results, such as heatmaps, differential expression tables, PCA/PCOA plots, Venn diagrams, Sankey plot and more• Easily customize RNA-seq workflows• Export publication-quality graphics, tables and reportsPer

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01:19

IPA Interpret graphical summary

tv.qiagenbioinformatics.com ·

2025/08/11

The Graphical Summary in IPA Interpret has been made more informative and easier to interpret. In Upstream Regulators, you can easily see the dataset details for genes in the summary. A tooltip now provides information about the Upstream Regulator’s score from your analysis and expression details (if the gene is in your dataset). This way, you can evaluate the expression of the underlying gene and view its prediction as a regulator at the same time.

en-us

02:05

IPA Interpret bubble charts

tv.qiagenbioinformatics.com ·

2025/08/11

New in IPA Interpret, bubble charts can help you find interesting patterns in your results, focus on the most important predictions and create compelling visualizations for presentation and publications.

en-us

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