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tv.qiagenbioinformatics.com

Watch tutorials, interviews and much more on our web based TV channel!

science & medicine

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55:18

Workflow construction and customization using QIAGEN...

tv.qiagenbioinformatics.com ·

2025/09/19

QIAGEN CLC Genomics Workbench allows easy construction and customization of variety of bioinformatic analysis workflows such as DNA-seq, RNA-seq, De Novo Assembly and more. Per feedback received, this session will focus on• A quick and brief introduction to CLC Genomics Workbench• How to construct a workflow• How to add or remove different steps• How to customize different parameters• How to execute the workflow• (Optional) How to install the workflow

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01:24:40

Influenza Virus Typing and Variant Detection Using...

tv.qiagenbioinformatics.com ·

2025/09/16

Join us for a focused webinar showcasing the Type Influenza Strain workflow within QIAGEN CLC Genomics Workbench. This streamlined, template-based workflow enables efficient typing of targeted Influenza virus sequencing data by integrating consensus sequence refinement, reference-based subtype identification and mixed-infection variant detection.We’ll show how the workflow:Automatically determines Influenza virus type and subtypeOutputs annotated consensus sequences with gene and CDS tracks for

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01:32:02

QIAGEN Ingenuity Pathway Analysis (IPA) for grant...

tv.qiagenbioinformatics.com ·

2025/09/15

IPA is more than just an analysis program; it can also help you write grants and publications. IPA provides biological insights backed by expert-curated findings and thousands of pre-analyzed multi-omics datasets. You can search for existing knowledge on molecules of interest, build networks and review results from public studies. Or you can identify key pathways, regulatory molecules and functional changes in your results and see how your data relates to published studies.You'll learn how to:•

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49:47

Gene Fusion Detection Using QIAGEN CLC Genomics...

tv.qiagenbioinformatics.com ·

2025/09/15

This webinar will focus on running the fusion detection analysis within QIAGEN CLC Genomics Workbench and annotating the detected fusions using curated clinical knowledge from Human Somatic Mutation Database (HSMD). Finally, the data will be uploaded to QIAGEN Clinical Insight (QCI) applications for further analysis.You will learn:• How fusion detection algorithms work• To run the fusion detection template workflow• To interpret the analysis results• To annotate fusions with HSMD• To upload and

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01:30:37

IPA deeper dive - miRNA investigation using QIAGEN...

tv.qiagenbioinformatics.com ·

2025/08/29

In this webinar, you will learn how to use QIAGEN Ingenuity Pathway Analysis to identify target mRNAs for your miRNAs of interest and associate them with pathways, diseases, biological functions, tissues and cell types.Explore:• How to analyze miRNA-seq datasets alone or together with the corresponding mRNA datasets• How to use QIAGEN IPA without a dataset, using miRNA IDs• An introduction to databases and curated content specific to miRNA• How to effectively apply various filters and

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01:28:12

HPV integration site mapping using QIAGEN CLC...

tv.qiagenbioinformatics.com ·

2025/08/29

Join us for an in-depth walkthrough of HPV integration site mapping using the CLC Microbial Genomics Module. This webinar presents a rapid, automated workflow for identifying and visualizing viral integration sites (VIS) in the human genome, using data from HPV-positive cervical samples. By leveraging the Viral Hybrid Capture (VHC) and VIS Identification workflows, researchers can perform end-to-end analysis—from taxonomic profiling to pinpointing virus-host breakpoints. Learn how this streamlined

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01:10:09

Public single-cell expression data made easy with...

tv.qiagenbioinformatics.com ·

2025/08/25

Many QIAGEN Ingenuity Pathway Analysis (IPA) users have expressed strong interest in taking advantage of public single-cell expression data. Such data is readily available and easily accessible in IPA. We are hosting a 1hr training focused on some common use cases related to this topic.You'll learn to:• Easily locate single-cell studies, samples or cell types of interest• Study pathways and networks pertaining to such projects to explore biological and cellular mechanisms• Investigate sample- and

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17:45

Leveraging QIAGEN OmicSoft for scRNA-Seq in Pharma -...

tv.qiagenbioinformatics.com ·

2025/08/25

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01:11:22

Novel discoveries utilizing public data through...

tv.qiagenbioinformatics.com ·

2025/08/25

In this 90-minute video, users will learn how to discover and validate biomarkers, key regulators and targets through harnessing uniformly-processed public data from sources such as GEO, SRA, cancer collections (TCGA, CCLE etc.), normal tissue/cell type collections (GTEx, HPA etc.) and more using QIAGEN Omicsoft Lands.

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16:12

Supporting Biomarker Discovery One Cell at a Time -...

tv.qiagenbioinformatics.com ·

2025/08/25

Single-cell gene expression analysis helps biologists and bioinformaticians reveal complex and rare cell populations, uncover regulatory relationships among genes and analyze and visualize gene expression differences among different cell types, or within a unique cell type. In this talk we will explore new tools for analyzing, interpreting and explore scRNA-seq data and the underlying biology. We will also show how to integrate ‘omics datasets from different platforms to gain insights into the

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01:26:00

Novel discoveries from public single-cell RNA-seq...

tv.qiagenbioinformatics.com ·

2025/08/25

QIAGEN OmicSoft Lands and QIAGEN Ingenuity Pathway Analysis (IPA) provide a powerful resource for exploring curated pre-analyzed public single-cell RNA-seq studies and providing downstream biological insights for these data. In this training, we will review how OmicSoft Lands allows for the interrogation of identified cell types within public single-cell datasets of interest and subsequent exploration of their associated gene signatures. The biological context of these signatures can then be

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01:26:06

Expression data analysis using QIAGEN Omicsoft Studio...

tv.qiagenbioinformatics.com ·

2025/08/25

In this training, users will learn how to generate downstream outputs such as heatmaps, differential expression tables, PCA/PCOA plots, box plots and other visualizations from their count or expression data (transcriptomics, proteomics, metabolomics, etc.). Attendees will learn how to: • Import either normalized or raw count data (transcriptomics, proteomics, metabolomics, etc.) into QIAGEN OmicSoft Studio • Generate downstream outputs such as differential expression tables, heatmaps, counts,

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01:24:55

Drug treatment, toxicology and target safety...

tv.qiagenbioinformatics.com ·

2025/08/25

In this 90-minute training, users will learn how to do drug treatment, toxicology and target safety assessment related discoveries using QIAGEN Ingenuity Pathway Analysis (IPA) and QIAGEN Omicsoft Lands. Using public data from GTEx (normal tissue), GEO, cancer collections and more, attendees will learn how to use Omicsoft Lands to: • Investigate a drug target or biomarker expression across different normal tissues, disease conditions, treatments and more • Correlate expression of 2 or more genes •

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01:13:44

Drug Target and Biomarker Investigation using...

tv.qiagenbioinformatics.com ·

2025/08/25

In this 90-minute training, attendees will learn how to use basic expression analysis functionalities in QIAGEN OmicSoft OncoLand. QIAGEN OmicSoft Single Cell Land will also be discussed, focusing on public single-cell data. Key focus will be on Biomarker discovery with QIAGEN OmicSoft OncoLand leveraging public oncology data from GEO, TCGA and other collections to: • Discover and validate biomarker expression in diseases, disease subtypes, treatments, cell types, etc. • Identify a list of

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01:24:39

Checkpoint inhibitors investigation in context of...

tv.qiagenbioinformatics.com ·

2025/08/25

This training will focus on how QIAGEN Omicsoft Studio and IPA can be used to discover new biomarkers, validate (or study) drug targets and identify novel mechanisms of action with user and/or public checkpoint inhibitor datasets from resources like GEO, SRA, TCGA and more.In this training, you will learn how to:· Investigate the expression of a gene/biomarker/drug target across different treatments and diseases· Derive a biomarker/gene signature from a specific condition (for example,

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01:46:03

Public single cell RNA-seq data investigation using...

tv.qiagenbioinformatics.com ·

2025/08/25

Slides from this training:https://qiagen.showpad.com/share/qm9IZA718x6x5h6pfsiTa Single cell lands tutorials: https://omicsoftdocs.github.io/ArraySuiteDoc/tutorials/SingleCellLand/Gene_Views/ Single cell RNA-sequencing (scRNA-seq) has been widely used to investigate tissue heterogeneity, identify novel cell types, study pathogenic mechanisms, development of targeted therapy (including immunotherapy) and more. Accordingly tremendous amount of scRNA-seq data has been deposited to public domains like

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01:32:48

Investigating public scRNA data using OmicSoft and...

tv.qiagenbioinformatics.com ·

2025/08/25

Single cell RNA-sequencing (scRNA-seq) has been widely used to investigate tissue heterogeneity, identify novel cell types, study pathogenic mechanisms, development of targeted therapy (including immunotherapy) and more. Accordingly tremendous amount of scRNA-seq data has been deposited to public domains like GEO. In this training, attendees will learn how to · Locate public single cell studies of their interest using Omicsoft Single Cell Lands · Study different cell types by dimension reduction

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40:34

Authenticated and reproducible cell line 'omics data

tv.qiagenbioinformatics.com ·

2025/08/25

Have you ever tried to access the genomic profiles of cell lines before using them in your preclinical experiments just to come up empty-handed? Maybe you’ve scoured public databases for gene expression information on your cell line to find the reported genomic profile doesn't match the cell line data you recently purchased? We understand that knowing the genomic identity of your cell lines is fundamental to the success of your preclinical experiments. Unfortunately, most publicly available sources

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01:28:33

Drug treatment, toxicology and target safety...

tv.qiagenbioinformatics.com ·

2025/08/25

In this 90-minute training, you’ll learn how to do drug treatment, toxicology and target safety assessment-related discoveries using QIAGEN Ingenuity Pathway Analysis (IPA) and QIAGEN Omicsoft Lands. Using public data from GTEx (normal tissue), GEO, cancer collections and more, you’ll learn how to use Omicsoft Lands to: • Investigate a drug target or biomarker expression across different normal tissues, disease conditions, treatments and more • Correlate expression of two or more genes • Identify a

en-us

59:54

How to triage drug targets with curated, causal...

tv.qiagenbioinformatics.com ·

2025/08/20

In the rapidly evolving landscape of drug discovery, the ability to integrate high-quality research findings into knowledge graphs is paramount. For over twenty years, our scientists have curated the relationships between genes, drugs, diseases, and pathways to power Ingenuity Pathway Analysis. Now, these data are available via our QIAGEN Biomedical KB-HD, which provides direct access to flat files, SQL APIs in Python and R, and the ability to export knowledge graph objects for analysis in Neo4j. In

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