PODCAST

Discovery and Research

tv.qiagenbioinformatics.com

Watch tutorials, interviews and much more on our web based TV channel!

science & medicine

All Episodes

51:07

RNA-seq Analysis Portal - Analysis of QIAseq miRNA...

Discovery and Research ·

2023/11/03

In this webinar, we will introduce how to analyze and explore your QIAseq miRNA data in RNA-seq Analysis Portal.During the webinar, we will answer the following questions: • Which sample kits are supported by RNA-seq Analysis Portal? • How to upload your data to RNA-seq Analysis Portal? • How to start an analysis? • How to create a project? • How to create an experiment for differential expression? • How to inspect your experiment and quality control of your dataset? • How to view and filter

en-us

01:12:06

Wastewater and COVID-19 data analysis using QIAGEN...

Discovery and Research ·

2022/02/11

In this 90-minute training, users will learn how to easily analyze wastewater samples to detect COVID-19 using QIAGEN CLC Genomics Workbench software. Users will learn how to: • Importing reads • Open and modify prebuilt workflow (analysis pipeline) • Install and execute workflow • Review QC reports • Visualization of genome • Export of consensus sequence in FASTA format to upload to Pangolin • Create a SNP tree of the consensus sequence and overlay Pangolin information • Export graphical and

en-us

01:20:17

Advancing drug discovery with organoid data analysis...

Discovery and Research ·

2021/12/14

Three-dimensional (3D) cell culture structures like spheroids and organoids can be used to better understand complex diseases and deliver insights into potential theraputic opportunities. They are also complementary to two-dimensional (2D) cell cultures and in vivo models. These model systems offer scientists a detailed view of organ development, new insights on human development and disease, improving drug discovery and creating new approaches to precision medicine endeavors. Accordingly, this

en-us

49:58

Discover hidden relationships in your toxicological...

Discovery and Research ·

2021/10/18

QIAGEN Ingenuity Pathway Analysis (IPA) reveals the hidden upstream drivers and downstream outcomes in your toxicogenomics datasets. Put those results into context using Analysis Match with over 50,000 pre-analyzed datasets for human, mouse and rat. Explain the causes and effects in your studies so you can generate hypotheses to develop better drugs, biomarkers and more. In this webinar you will learn how QIAGEN IPA: • Is supported by QIAGEN’s Knowledge Base of over 7 million findings curated from

en-us

01:14:49

Discovery from public oncological data using QIAGEN...

Discovery and Research ·

2021/06/24

In this 90-minute training, we will discuss how to discover and validate biomarkers as well as drug targets and key genes using public oncological data from GEO, TCGA, CCLE and other sources. To do this, we will use QIAGEN Omicsoft OncoLand, QIAGEN Ingenuity Pathway Analysis (IPA) and the OmicSoft Land Explorer web interface. Specifically, for conditions of interest (diseases, cell lines, treatments etc.), we will discuss how to: • Identify public studies of interest • Derive a biomarker/gene

en-us

52:53

Uncovering Genomic Evidence of SARS-CoV-2 Infection...

Discovery and Research ·

2021/06/17

Is it possible to become reinfected with SARS-CoV-2? If so, how can we identify and confirm reinfection? What tools can we use to better identify prevalent and emerging strains of SARS-CoV-2? Joel Sevinsky, Principal at Theiagen Consulting, is an expert in bioinformatics in the public health space and coauthor of a recent paper exploring the genomics evidence for reinfection with SARS-CoV-2 that was published in The Lancet Infectious Diseases. In this webinar, Dr. Sevinsky will discuss: How

en-us

59:46

From data to biological insight using QIAGEN CLC...

Discovery and Research ·

2021/06/11

Organ development during gestation is a complex series of hematopoietic events. Many different lineages are involved at various stages, from pluripotent hematopoietic progenitors to the final differentiated cell types. Analyzing the cellular and molecular mechanisms of liver development is key to understanding the cell types that comprise this vital organ and the roles they play. We analyzed single-cell transcriptomes of human fetal liver to highlight the different cell type clusters and their

en-us

01:24:48

Investigation of Somatic and Germline Variants by...

Discovery and Research ·

2021/06/07

Identifying and studying actionable variants is of great interest to many investigators. In this webinar, COSMIC, HGMD and QIAGEN database will be introduced for annotation and investigation of both somatic and germline variants. Attendees will learn how to use QCI Interpret Translational (QCI-I T) to identify key actionable variants from whole-genome sequencing, whole-exome sequencing or DNA panels. In addition, attendees will learn how these variants can be annotated with findings derived from

en-us

01:15:41

Calling, annotating and investigating genomic...

Discovery and Research ·

2021/06/01

In this 90-minute training, attendees will learn how to call SNPs, MNPs and structural variants (insertions, deletions, inversions and copy number variants) using QIAGEN CLC Genomics Workbench. In addition, we will demonstrate how to annotate these variants using both QIAGEN CLC Genomics Workbench and QIAGEN Clinical Insight Interpret Translational (QCII-T). In this training, we will discuss the following topics: • Variant calling from FASTQ or BAM files using QIAGEN CLC Genomics Workbench • Variant

en-us

46:53

RNA sequence analysis using PacBio and Illumina reads...

Discovery and Research ·

2021/05/28

Learn ways to accelerate your agrigenomics research and analyses in this 3-part webinar series that will take you through de novo assembly and annotation in non-model organisms, plastid assembly and long-read host-pathogen analysis in plants. In this webinar learn from an expert in plant genetics and bioinformatics about Expression analysis using short and long reads in a host-pathogen interaction. Who should watch: Plant geneticists, agricultural scientists, researchers studying non-model organism

en-us

01:02:14

SARS-CoV-2 NGS surveillance & epidemiology with...

Discovery and Research ·

2021/05/14

This one-hour event will summarize our solutions for genomics research, environmental testing, and epidemiological study of SARS-CoV-2 NGS data, including: Local and high-performance cloud (GCE) deployment • Workflows for analyzing SARS-CoV-2 data using CLC Genomics software and focused approaches such as QIAseq SARS-CoV-2 Primer and Ion AmpliSeq SARS-CoV-2 panels. • Analysis features, such as read mapping, consensus sequence, variant calling, and visualizations for efficient interpretation and

en-us

42:05

Assembly and annotation of plastid genomes using...

Discovery and Research ·

2021/05/11

Learn ways to accelerate your agrigenomics research and analyses in this 3-part webinar series that will take you through de novo assembly and annotation in non-model organisms, plastid assembly and long read host-pathogen analysis in plants.In this webinar learnfrom an expert in plant genetics and bioinformatics about denovo assembly and annotation of plastid genomesWho should watch:Plant geneticists, agricultural scientists, researchers studying non-model organism genetics, agrigenomics

en-us

36:00

Genome assembly evaluation and improvement of...

Discovery and Research ·

2021/05/10

Learn ways to accelerate your agrigenomics research and analyses in this 3-part webinar series that will take you through de novo assembly and annotation in non-model organisms, plastid assembly and long read host-pathogen analysis in plants.In this webinar learnfrom an expert in plant genetics and bioinformatics about genome assembly evaluation and annotation tools.Who should watch:Plant geneticists, agricultural scientists, researchers studying non-model organism genetics, agrigenomics scientists,

en-us

01:08:23

Enabling High-Throughput Genomic Surveillance of...

Discovery and Research ·

2021/03/22

In December 2020, the assumption that SARS-CoV-2 was a slowly-mutating virus began to change with the emergence of variants of concern in the United Kingdom and South Africa, the B.1.1.7 and B.1.351 variants, respectively. These lineages contained mutations in the spike protein that are estimated to increase the transmissibility of the virus by over 50% compared to earlier strains and provide potential avenues for immune escape. Unique spike protein mutational combinations continue to emerge

en-us

04:29

Transcriptomic analyses of in vitro flavivirus- or...

Discovery and Research ·

2020/09/05

The emergence of global viral infections reminds us of the significant public health issues brought about by these pathogens. In the last 30 years, new viral threats have arisen across the world, as exemplified by the recent COVID-19 pandemic. These viruses have had extensive impacts on human populations, and in many cases, have caused severe symptoms and even death. Therefore, understanding the immune response to these viruses is critical. We have analyzed the transcriptomes of cell lines infected

en-us

03:32

Multi-omic changes in the postnatal mouse heart...

Discovery and Research ·

2020/05/18

Multi-omics experiments allow researchers to make important discoveries in ways that have never before been possible. However, integrating these data into a broader biological context can be challenging and time consuming when using standard resources. At QIAGEN, we have introduced an innovative solution to this challenge: The market-leading QIAGEN Ingenuity Pathway Analysis (IPA) software integrated with our QIAGEN OmicSoft databases. In this webinar, Lynne Mullen, Ph.D., Senior Scientist, QIAGEN

en-us

03:30

Biomedical genomics using QIAGEN CLC Genomics Workbench

Discovery and Research ·

2020/05/12

In this webinar, Leif Schauser, Ph.D., Director Product Management, Genome Analysis at QIAGEN will describe common biomedical uses of QIAGEN CLC Genomics Workbench. In this informative webinar, you will learn about these topics, and more: • Getting started with biomedical genomics • Easy management of reference data • Efficient algorithms for read trimming, mapping and variant calling • Tailored solutions for RNA-seq, DNA-seq and methylation • Ready-to-use workflows for tumor-normal, trios and

en-us

48:20

Bacterial strain typing and genomics characterization...

Discovery and Research ·

2020/05/12

In this live webinar, we will present this tool and its utility for bacterial isolate identification, strain discrimination and detailed genomic analysis of multi-drug resistance.We will showbioinformatics analysis workflows built using QIAGEN CLC Genomics ProSuite for routine food testing and surveillance purposes. Finally, we will demonstrate methods using the QIAGEN Microbial Insights database and ARES Genetics’ ARESdb, two antimicrobial resistance genomic databases provided to QIAGEN CLC users

en-us

03:05

Using QIAGEN Digital Insights to determine how LY6E...

Discovery and Research ·

2020/05/06

Zoonotic coronaviruses (CoVs) are significant threats to global health, as exemplified by the recent emergence of SARS-CoV-2. Host immune responses to CoV are complex and regulated in part through antiviral interferons. However, the interferon-stimulated gene products that inhibit CoV are not well characterized. In this webinar, we explain the findings of our recent study in which we identified LY6E as a broad coronavirus restriction factor. Our findings advance our understanding of immune-mediated

en-us

03:00

Bioinformatics analysis of Nanopore sequencing data...

Discovery and Research ·

2020/05/01

The study of the COVID-19 pandemic often involves sequencing the SARS-CoV-2 virus using Illumina, Nanopore, IonTorrent and Sanger technologies alone or in combination. Depending on the sampling and library preparation method used, this can involve metatranscriptomic data of varying viral content. In this webinar tutorial, you will learn about: · Best practices for bioinformatic analyses using the versatile QIAGEN CLC Genomics Workbench · QC, adapter trimming and strategies for host read depletion

en-us

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Discovery and Research

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